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594 followers · 11 following · 79

Highlights

  • Arctic Code Vault Contributor
  • Pro

Organizations

@Victorian-Bioinformatics-Consortium @pha4ge

Pinned

  1. prokka

    ⚡ ♒ Rapid prokaryotic genome annotation

    Perl 406 148

  2. snippy

    ✂️ ⚡ Rapid haploid variant calling and core genome alignment

    Perl 219 67

  3. shovill

    ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

    Perl 109 24

  4. abricate

    🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

    Perl 135 38

  5. nullarbor

    💾 📃 "Reads to report" for public health and clinical microbiology

    Perl 83 30

  6. mlst

    🆔 Scan contig files against PubMLST typing schemes

    Perl 82 25

759 contributions in the last year

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Contribution activity

November 2020

Reviewed 1 pull request in 1 repository
bioconda/bioconda-recipes 1 pull request

Created an issue in ncbi/amr that received 2 comments

makeblastdb on custom databases?

The -u (update) option does two things: DOWNLOAD FORMAT (makeblastdb) Could you please add an option to (re)-format the BLAST databases (CDS and …

2 comments
6 contributions in private repositories Nov 10 – Nov 20

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