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Jirka Borovec Borda

Computer Vision & Machine Learning & Bio-Medical Imaging & Deep Learning

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285 followers · 168 following · 172

Highlights

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pyImSegm

Image segmentation - general superpixel segmentation & center detection & region growing

Python 172 52
BIRL

BIRL: Benchmark on Image Registration methods with Landmark validations

Python 43 16
pyBPDL

Binary Pattern Dictionary Learning for gene activation in microscopy images

Python 5 1
PyTorchLightning/pytorch-lightning

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate.

Python 8.5k 980
ij-CMP-BIA

Extension for ImageJ (Fiji) by BIA segmentation methods as plugins and some other useful API for image segmentation.

Java 1 9
docker_python-opencv-ffmpeg

Forked from Valian/docker-python-opencv-ffmpeg

Dockerfile containing FFmpeg, OpenCV4 and Python2/3, based on Ubuntu LTS

Dockerfile 23 15

2,242 contributions in the last year

Activity overview

Contributed to PyTorchLightning/pytorch-lightning, PyTorchLightning/pytorch-lightning-bolts, ultralytics/yolov5 and 5 other repositories

Contribution activity

September 2020

Created a pull request in ultralytics/yolov5 that received 8 comments

update expt name comment and folder parsing for training

updating argument description and cleaning weak parsing indexes from listed folders

+8 −4 • 8 comments

nightly releases Sep 18
build more docker configs Sep 17
fix lib paths after Wandb 0.10 Sep 16
update stale config Sep 15
build docs on master Sep 14
drop v0.10 deprecated Sep 10
fix docs built - drop nb sphinx Sep 10
Revert "ref: separate trainer docstrings poc (#3418)" Sep 9
license update Sep 9
ignore types in files Sep 9
add CI for building dockers Sep 7

add CI - build & run [wip] Sep 1
update references Sep 1

adding minimal CI Sep 11

add lightning colab tutorial notebooks Sep 22
Update gitignore Sep 21
Small documentation fix Sep 21
Fix incorrect "Saving latest checkpoint" warning Sep 21
Add stronger typing to gradient accumulation scheduler callback Sep 21
Added check to verify xla device is TPU Sep 21
use tmpdir in tests when writing predictions to disk Sep 20
Support checkpoint hooks on data module Sep 20
[Metrics] AUROC error on multilabel + improved testing Sep 20
Allow on_save_checkpoint callback functions to run on all ranks Sep 20
Fix typo in loggers.rst Sep 19
Fix failed import warning for torch.distributed.group Sep 19
Early stopping doc Sep 18
Configure checkpoint fix Sep 18
Allow kwargs in Wandb & Neptune + kwargs docstring Sep 18
Adding clarifying documentation on the usage of second_order_closure Sep 18
WIP: Fix non-tensor scalar result aggregation Sep 18
Fix early stopping with training step's return dict Sep 18
[blocked by #3541]Add Torch nightly GPU CI Sep 18
Make dims a property in datamodule Sep 18
Fix misuse of transforms in docs Sep 18
Fix ModelCheckpoints name formatting Sep 17
Fix log debug call Sep 17
[blocked by refactor] [WIP] graceful shutdown signal handling Sep 15
Use `viewcode` extension instead of `linkcode` Sep 15
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autoencoders update Sep 17
[wip] Swav Sep 17
updated import path for simclr model Sep 17
Fix for SiameseArm has no pooler Sep 16
Fix examples for pretrained AE and VAE models Sep 15
ref: fix fastrcnn test Sep 15
add correct link for CPCv2 resnet-18 Sep 15
updated cpc docs with imagenet Sep 11
add seed_everything to ae/vae examples Sep 11
Modularize AE & VAE Sep 10
wip Byol update Sep 10
Add output_dim parameter to LinearRegression Sep 10
updated cpc docs Sep 10
weights link for cpc_v2 Sep 10
fix skipped tests Sep 10

Add pytorch-lightning to pytorch-integration-testing Sep 21

Add CSS for `automethod` Sep 15

Created an issue in ultralytics/yolov5 that received 10 comments

How suspend image mixing

❔Question I want to run image training with quite a conservative augmentation so just flipping and small translation/zoom, but the samples are alwa…

10 comments

add support for 1.7 nightly Sep 17
add tests for metrics in DDP Sep 15
handle aggregation of different batches Sep 15
split metric in pre- and post- sync/reduce computation steps Sep 15

custome name for experiment Sep 16
use alternative optimizer Sep 8

re-enable sphinx doctests Sep 15

Multiple timeouts per label Sep 15

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