The Wayback Machine - https://web.archive.org/web/20211224185629/https://github.com/topics/genomic-data-analysis
Here are
85 public repositories
matching this topic...
a framework for training sequence-level deep learning networks
Updated
Oct 19, 2021
Jupyter Notebook
A grammar of genomic data transformation
A modular annotation tool for genomic variants
Updated
Dec 1, 2021
JavaScript
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Updated
Oct 28, 2020
Python
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Updated
Dec 20, 2021
TypeScript
RADseq Data Exploration, Manipulation and Visualization using R
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
Phigaro is a scalable command-line tool for predicting phages and prophages
Updated
Mar 10, 2021
HTML
stackr: an R package to run stacks software pipeline
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
Genome Contact Map Explorer - gcMapExplorer. Visit:
Updated
Dec 10, 2019
Python
Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.
Updated
Mar 19, 2019
HTML
iPat allows you to perform GWAS and GS with drags and clicks!
genomic alignment similarity search tool
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
iDASH 2017 competition, track 2 winning team solution
Updated
Nov 21, 2018
Rust
Build DeepSea training dataset from raw data
Updated
Jun 18, 2020
Python
Shiny app for making and annotating Volcano plots
JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes
Updated
Nov 10, 2020
Python
Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array
Python library to query and transform genomic data from indexed files
Updated
Dec 13, 2021
Python
Differential Privacy Protection against MembershipInference Attack on Machine Learning for Genomic Data
Updated
Aug 4, 2020
Python
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Updated
Aug 10, 2021
HTML
Run Sentieon pipelines on Google Cloud Platform
Updated
May 3, 2021
Shell
grur: an R package tailored for RADseq data imputations
Tools for exploration and analysis of biochemical data like genomics and proteins
FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data
Updated
Oct 27, 2021
Python
Final Year Project Repository for correlating the personality trait with the diseases
Updated
Oct 2, 2018
Python
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