The Wayback Machine - https://web.archive.org/web/20210815060206/https://github.com/topics/protein-design
Here are
37 public repositories
matching this topic...
Updated
Aug 13, 2021
Jupyter Notebook
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Updated
Aug 4, 2021
Jupyter Notebook
Fitness landscape exploration sandbox for biological sequence design.
Updated
Jun 2, 2021
Jupyter Notebook
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
Updated
Aug 1, 2021
Python
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Updated
May 10, 2021
Objective-C
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
Updated
Mar 30, 2021
Python
Guided Conditional Wasserstein GAN for De Novo Protein Design
Updated
Feb 23, 2021
Roff
Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
Updated
Mar 24, 2021
Jupyter Notebook
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
RosettaDesign using PyRosetta
Updated
Aug 22, 2019
Python
Rosetta FunFolDes – a general framework for the computational design of functional proteins.
Updated
Apr 12, 2019
Scala
Design platform for creating single-chain polyhedral cages made from coiled-coil building modules
Updated
Oct 12, 2017
Python
Python Toolbox For Rosetta Silent Files Processing
Updated
May 23, 2019
Python
An ML-feature processing library for biological sequences.
Updated
Oct 31, 2020
Python
Intelligent System for Analysis, Model Building And Rational Design.
Updated
Apr 20, 2018
Python
Python Toolbox For Rosetta Silent Files Processing
Updated
Aug 2, 2021
Python
A protein fragments picker
Updated
Sep 26, 2019
OCaml
Rotamer Interaction Field Python Libraries for Computational Protein Design
Python script to visualize helical wheels based on input sequence.
Updated
Mar 27, 2019
Python
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
Our final project for Deep Learning in Discrete Optimization taught by Bill Cook. We developed an ML-based branching rule for solving Protein Design problems in Weighted Constraint Satisfaction form.
Rosetta FunFolDes – a general framework for the computational design of functional proteins.
Updated
Apr 12, 2019
Scala
Case examples and tutorial for FunFolDes
Updated
Oct 29, 2017
Jupyter Notebook
Using Rotamer Interaction Fields from RIFGen/Dock in python
Updated
May 2, 2021
Python
In silico directed evolution
Updated
Apr 19, 2021
Python
Large data set of thermal stabilities for mutants of BglB, and associated publication
Updated
May 31, 2017
Jupyter Notebook
Foldit model of BglB for the Bagel project
Laboratory protocol for the Bagel project
Quantitative prediction of mutant function across an enzyme family
Updated
Sep 7, 2017
Jupyter Notebook
[ICML 2021] "Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design" by Yue Cao, Payel Das, Vijil Chenthamarakshan, Pin-Yu Chen, Igor Melnyk, Yang Shen
Updated
Jun 8, 2021
Python
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