rna-seq-pipeline

Here are 89 public repositories matching this topic...

urmi-21 / pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

python bioinformatics rna-seq conda bioinformatics-pipeline bioconda bioinformatics-analysis rna-seq-pipeline ncbi-sra rna-seq-workflows

Updated Jun 4, 2021
Python

GuyTeichman / RNAlysis

Star

RNA sequencing analysis software

bioinformatics rna-seq gui-application bioinformatics-pipeline rnaseq transcriptomics rna-seq-analysis bioinformatics-analysis smallrna rna-seq-pipeline bioinformatics-tool smallrna-seq

Updated Dec 20, 2022
Python

uc-bd2k / GREIN

Star

GREIN : GEO RNA-seq Experiments Interactive Navigator

processing rna-seq r geo graphical-interface gene-expression bioinformatics-pipeline interactive-analysis shiny-apps rna-seq-analysis rna-seq-data interactive-visualizations bioinformatics-analysis gene-expression-omnibus rna-seq-pipeline geo-data-processing grein

Updated May 28, 2019
HTML

jumphone / SPRINT

Star

SNP-free RNA editing Identification Toolkit

rna-seq rna-seq-analysis rna-editing rna-seq-mapping rna-seq-pipeline

Updated Apr 25, 2022
Python

Taiji-pipeline / Taiji

Star

All-in-one analysis pipeline

transcriptional-regulatory-network single-cell-rna-seq rna-seq-pipeline single-cell-atac-seq atac-seq-pipeline

Updated Aug 20, 2022
Haskell

NCBI-Hackathons / SPeW

Star

Automatic Packaging and Distribution of Bioinformatics Pipelines

docker pipeline nextflow rna-seq-pipeline

Updated Sep 29, 2017
Python

PalMuc / TransPi

Star

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

rna-seq annotation nextflow assembly transcriptomics denovo-assembly rna-seq-pipeline nextflow-pipeline non-model-species

Updated Jan 2, 2022
Nextflow

zavolanlab / zarp

Star

Zavolan-Lab Automated RNA-Seq Pipeline

bioinformatics rna-seq snakemake rna-seq-pipeline

Updated Dec 12, 2022
Python

uc-bd2k / GREP2

Star

GEO RNA-seq Experiments Processing Pipeline

rna-seq pipeline sra gene-expression-omnibus sratoolkit rna-seq-pipeline

Updated Oct 25, 2019
R

giuliospinozzi / arpir

Star

Automatic RNA-Seq Pipelines with Interactive Report

rna-seq automated rna-seq-analysis report-generator rna-seq-pipeline

Updated Sep 10, 2021
R

egaffo / CirComPara

Star

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

bioinformatics rna-seq gene-expression bioinformatics-pipeline transcriptomics rna-seq-analysis circrna rna-seq-data circular-rna circseq rna-seq-pipeline circrnas

Updated Jun 17, 2020
R

eonurk / RNA-seq-differential-analyses-guideline

Star

A quick recap of widely used differential analyses methods in R for RNA-seq experiments

deseq2 edger limma rna-seq-pipeline limma-voom limma-trend

Updated Mar 12, 2020

cellgeni / rnaseq

Star

Fast RNAseq pipeline

nextflow rna-seq-pipeline

Updated Nov 17, 2022
Groovy

vondoRishi / 4-RNA-seq

Star

A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds

slurm fastq rna-seq-analysis rna-seq-pipeline rawreads sortmerna

Updated Apr 7, 2022
HTML

hanielcedraz / BAQCOM

Star

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

bioinformatics quality-control mapping bioinformatics-pipeline multiqc star hisat2 rna-seq-analysis featurecounts rna-seq-mapping fastqc rna-seq-pipeline htseq-count rna-seq-qc rnaseqpipeline trimmomatic rna-seq-aligner

Updated Mar 29, 2022
R

zavolanlab / PAQR2

Star

Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository.

bioinformatics snakemake rna-seq-pipeline polyadenylation

Updated Dec 7, 2022
Python

BleekerLab / snakemake_rnaseq

Star

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

docker bioinformatics snakemake genomics conda rna-seq-analysis rna-seq-pipeline

Updated Oct 27, 2022
Python

schosio / CHOLAR

Star

Automated RNA-seq pipeline for lncRNA indentification

bioinformatics automated rna-seq-analysis lncrna rna-seq-pipeline lncrna-pipeline lncrna-identification

Updated Nov 8, 2022
Shell

czheluo / Teach-Bioinformatics-R-dataviz

Star

Materials for "Teaching Bioinformatics and R for dataviz course" June-August 2019 in Majorbio

dataviz rna-seq-pipeline teaching-statistics teaching-bioinformatics

Updated Jun 5, 2020
R

mhjiang97 / RNASeqFlow

Star

A small python tool for RNA-seq workflows

python workflow rna-seq-pipeline

Updated Nov 9, 2022
Python

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