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The Wayback Machine - https://web.archive.org/web/20211107024157/https://github.com/topics/edger
Here are
21 public repositories
matching this topic...
Brings transcriptomics to the tidyverse
Statistical Analysis of RNA-Seq Tools
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
A computational pipeline for bulk ATAC-seq (or RNA-seq)
Various tutorials on how to analyse transcriptomic data.
Updated
May 11, 2021
HTML
This tutorial is created for educational purpose
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
Probabilistic outlier identification for bulk RNA sequencing data
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Sea lion urine comparison with spectral counting.
Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)
some scripts to process transcriptomics and Chip-seq data
Updated
Aug 10, 2021
JavaScript
Enhanced volcano plot using edgeR data
Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.
A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks
Updated
Sep 6, 2019
Jupyter Notebook
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Analyses combining RRBS, ATAC-seq, and RNA-seq data for purple urchins
Updated
Mar 2, 2021
Shell
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
Updated
Jun 10, 2017
Python
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