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gwas

Here are 273 public repositories matching this topic...

hail

hail-is / hail

Scalable genomic data analysis.

python bioinformatics gwas scala spark genomics genetics vcf software hail

Updated Aug 12, 2022
Python

MareesAT / GWA_tutorial

A comprehensive tutorial about GWAS and PRS

unix bioinformatics gwas r genomics genetics plink prs population-structure qc population-stratification

Updated Jan 3, 2020

projectglow / glow

An open-source toolkit for large-scale genomic analysis

machine-learning gwas spark genomics regression delta population-genetics

Updated Jul 29, 2022
Scala

stephenturner / qqman

An R package for creating Q-Q and manhattan plots from GWAS results

cran gwas r genomics

Updated Apr 16, 2021
R

JoniColeman / gwas_scripts

Codebook from my GWAS cookbook

quality-control gwas imputation

Updated May 26, 2022
R

choishingwan / PRSice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

Updated Jan 10, 2022
C++

statgen / locuszoom

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

gwas locuszoom gwas-tools gwas-summary-statistics locuszoom-plot

Updated Jul 20, 2022
JavaScript

VariantSpark

aehrc / VariantSpark

machine learning for genomic variants

emr aws bioinformatics gwas genome random-forest notebook vcf databricks association-studies variant-spark variantspark

Updated Jul 12, 2022
JavaScript

AdmiralenOla / Scoary

Pan-genome wide association studies

gwas genomics bacteria pan-genome gene-presence-absence

Updated Oct 4, 2017
Python

zhanxw / rvtests

Rare variant test software for next generation sequencing data

c-plus-plus gwas kernel genetics ngs next-generation-sequencing variants meta-analysis genotype umich skat association-analysis rare-variant vcf-files

Updated Jan 26, 2022
C++

pystatgen / sgkit

Statistical genetics toolkit

gwas genetics pydata popgen statistical-genetics statgen

Updated Aug 13, 2022
Python

JonJala / mtag

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

gwas statistical-genetics multi-trait-analysis mtag

Updated Jun 21, 2022
Python

BGI-shenzhen / LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

gwas ld ld-heatmap ld-block linkage-disequilibria

Updated Feb 16, 2022
Perl

mgalardini / pyseer

SEER, reimplemented in python 🐍

🔮

gwas reproducible-science reimplementation bacteria k-mer

Updated Jul 11, 2022
Python

polyfun

omerwe / polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

gwas statistical-genetics fine-mapping

Updated Aug 12, 2022
Python

TileDB-Inc / TileDB-VCF

Efficient variant-call data storage and retrieval library using the TileDB storage library.

python data-science bioinformatics gwas spark genomics vcf variant-calling tiledb

Updated Aug 13, 2022
C++

genepi / imputationserver

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

gwas imputation minimac4 software-as-a-service

Updated Jul 12, 2022
Java

MAGMA_Celltyping

neurogenomics / MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics

gwas snps genomics single-cell statistical-genetics magma single-cell-omics

Updated Aug 11, 2022
R

boxiangliu / locuscomparer

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

gwas eqtl colocalization

Updated May 6, 2020
R

frankvogt / vcf2gwas

Python API for comprehensive GWAS analysis using GEMMA

gwas vcf gemma-analysis

Updated Apr 29, 2022
Python

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